PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG040100.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 255aa    MW: 28697.9 Da    PI: 9.0398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG040100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.3e-33157213158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  Pavir.9KG040100.4.p 157 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRKPYLHESRHQHAMRRARGNGGRF 213
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.651156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28158213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-25159181IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860161181IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.5E-25190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MCCQFEEFDS LPIVASAMKV FFLPSNNKFR IDVILIPDGS AGQEKNHATS QMPALMSEYL  60
TPYSQLELNQ SIVRTLFSME SISCLFMFPF SLNMSGTVTV SLVSCPYLFL VQGSAAYQYP  120
DPYYAGMIPP YGTQAVAHFQ LPGLSHSRMP LPLEVSEEPV YVNAKQYHGI LRRRQSRAKA  180
ELEKKVVKTR KPYLHESRHQ HAMRRARGNG GRFLNTKKSD NGTPNGNAEP KKGDQNYEHL  240
HVPPDLLQLR QNEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-22157221266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.20180.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG040100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795066.11e-120nuclear transcription factor Y subunit A-9-like
TrEMBLA0A2S3IJ321e-119A0A2S3IJ32_9POAL; Uncharacterized protein
STRINGPavir.J08102.1.p1e-121(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.16e-42nuclear factor Y, subunit A9