PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG067400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 179aa    MW: 20138 Da    PI: 9.0286
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG067400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.42.6e-7251692170
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          ++   +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl    q l++++h   +l +e  + ++ ++ ++++n++++  
  Pavir.9KG067400.1.p   5 QIAPPPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLIGLIQSLPVQNH--SQLVQENFKVHNIHNISFTENYSEYAP 92 
                          567889******************************************************9..6777777888889999*********** PP

                YABBY  92 astsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +s++ ++ ++   + +++++ +    +r  ekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pavir.9KG067400.1.p  93 SSSKFRMPMMfsAKGDQDHMLH----VRALEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 169
                          *****99998744555556665....899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.8E-709169IPR006780YABBY protein
SuperFamilySSF470957.07E-7115163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-4119163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSSAQIAPPP EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLIGLIQSL  60
PVQNHSQLVQ ENFKVHNIHN ISFTENYSEY APSSSKFRMP MMFSAKGDQD HMLHVRALEK  120
RQRVPSAYNR FIKEEIRRIK ASNPAISHRE AFSTAAKNWA HFPNIHFGLG THEKQQEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.59510.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG067400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795818.11e-109protein YABBY 2-like isoform X2
SwissprotQ10FZ72e-94YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2T7C3301e-111A0A2T7C330_9POAL; Uncharacterized protein
STRINGPavir.Ib04136.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-55YABBY family protein