PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG067400.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 135aa    MW: 15455.5 Da    PI: 9.2264
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG067400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY293.3e-09531228
                YABBY  2 dvfssseqvCyvqCnfCntilavsvPs 28
                         ++   +e+vCyv+CnfCntila +   
  Pavir.9KG067400.6.p  5 QIAPPPEHVCYVHCNFCNTILAENFKV 31
                         567889***************987655 PP
2YABBY125.76.5e-393312576170
                YABBY  76 kveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                          + ++ ++++n++++  +s++ ++ ++   + +++++ +    +r  ekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahf
  Pavir.9KG067400.6.p  33 NIHNISFTENYSEYAPSSSKFRMPMMfsAKGDQDHMLH----VRALEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHF 118
                          56778899999999999999999998744455556665....899********************************************* PP

                YABBY 164 Pkihfgl 170
                          P+ihfgl
  Pavir.9KG067400.6.p 119 PNIHFGL 125
                          *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.1E-6934IPR006780YABBY protein
PfamPF046906.2E-3745125IPR006780YABBY protein
SuperFamilySSF470953.91E-771119IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-475119IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSSAQIAPPP EHVCYVHCNF CNTILAENFK VHNIHNISFT ENYSEYAPSS SKFRMPMMFS  60
AKGDQDHMLH VRALEKRQRV PSAYNRFIKE EIRRIKASNP AISHREAFST AAKNWAHFPN  120
IHFGLGTHEK QQEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.59511e-142callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG067400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795820.13e-69protein YABBY 2-like isoform X4
SwissprotQ10FZ71e-60YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGV09e-74A0A368SGV0_SETIT; Uncharacterized protein
STRINGPavir.Ib04136.1.p1e-88(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-37YABBY family protein