PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG081900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 332aa    MW: 37315.1 Da    PI: 6.9645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG081900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.7e-20391201399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +  +++p +fa++++g    s  ++l+++ g++W++ +  ++  ++++l++GWkeFv+a+ ++egD ++Fk++g s+f   v +f++
  Pavir.9KG081900.2.p  39 TETMSIPGRFANNFNGH--ISEVVSLKSPGGKTWSIGV-GNNANDEVMLQSGWKEFVSAHSIEEGDYLLFKYSGVSSF--DVLIFDS 120
                          4569*******888666..6779***************.4555556***************************99999..9999886 PP
2B344.33.3e-142423221899
                          --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          ++ +fa+++ g +++  +++l+   s  +W v+++ ++ s++ + ++GW +Fv +ngL   D+++F+l++  ++ +++v+v+rk
  Pavir.9KG081900.2.p 242 ISSEFAAKYLGATRG--EIILQRvGSKGKWHVRYSCNRFSRG-LVGRGWCGFVGDNGLLNHDVCLFELIKGkQRPTMTVHVLRK 322
                          8899*****666555..68888857779******98888887.5688**********************776999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2324123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2326126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.01627121IPR003340B3 DNA binding domain
CDDcd100171.34E-2128119No hitNo description
SMARTSM010191.2E-1130121IPR003340B3 DNA binding domain
PfamPF023622.7E-1739119IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-13234321IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0017238323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-14240321IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.77242323IPR003340B3 DNA binding domain
PfamPF023624.8E-12242322IPR003340B3 DNA binding domain
CDDcd100172.06E-10242318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV  60
SLKSPGGKTW SIGVGNNAND EVMLQSGWKE FVSAHSIEEG DYLLFKYSGV SSFDVLIFDS  120
SGCEKTAPHF AQNHGCERIE GSAGVEGAQL ELAVQRNTSR SIPNPCKRKL CRDIEQVRCH  180
VKDDEDDLEV DHEGDTPAAK TGYYFCKNGP VSAYHLTEEE REEISSVRIP AQPTNPVFVQ  240
AISSEFAAKY LGATRGEIIL QRVGSKGKWH VRYSCNRFSR GLVGRGWCGF VGDNGLLNHD  300
VCLFELIKGK QRPTMTVHVL RKVRDRFVLL R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74460.0callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG081900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0928137e-41FP092813.1 Phyllostachys edulis cDNA clone: bphyem212f21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797496.10.0B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM31e-124Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A2T7C3L60.0A0A2T7C3L6_9POAL; Uncharacterized protein
STRINGPavir.Ib03973.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]