PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG082300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 332aa    MW: 38146.2 Da    PI: 9.9697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG082300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-1933121198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkvl       + rl +p kf++++ gk   +kt++le+++  +++v++  + + g++vl++GWk Fv a++Lk  Df+vFk+dg+ + 
  Pavir.9KG082300.1.p  33 FFKVL---TGDFHERLGIPDKFVQHIRGK--IGKTVKLESRTRCTFDVEV--TESLGKVVLQTGWKAFVCAHDLKMWDFLVFKYDGSPR- 114
                          66666...4455678********888888..788****************..********************************98544. PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                           l+v +f+
  Pavir.9KG082300.1.p 115 -LKVLIFD 121
                          .5888887 PP
2B345.61.3e-14240328997
                          HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            +k + + +++++a+ +   +g+        l + +g+sWev ++++k+++      l kGWk+F+++n+L++gD ++F+l +++e  +
  Pavir.9KG082300.1.p 240 IEGKPQTMDISREYADVYlpfDGQ------TLLLQHRGKSWEVWCQIKKSKSNlraKRLVKGWKQFARDNNLQVGDLCLFELLENREYAM 323
                          556667788999999777654333......455667*********987777666668889*********************998887778 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                          +v ++
  Pavir.9KG082300.1.p 324 NVDII 328
                          88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2226125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2228130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.95530123IPR003340B3 DNA binding domain
CDDcd100173.05E-2231121No hitNo description
SMARTSM010191.6E-1033123IPR003340B3 DNA binding domain
PfamPF023623.5E-1633121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-20225329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-18226326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28232331IPR003340B3 DNA binding domain
CDDcd100171.28E-13234315No hitNo description
SMARTSM010193.1E-8235331IPR003340B3 DNA binding domain
PfamPF023621.2E-12239328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MQGVVKMRKP GKGCKKTDAH YYWNRSDDND RYFFKVLTGD FHERLGIPDK FVQHIRGKIG  60
KTVKLESRTR CTFDVEVTES LGKVVLQTGW KAFVCAHDLK MWDFLVFKYD GSPRLKVLIF  120
DLSCCEKVPP CHICDRRKGE EQIENSKSCD DFPMKSPGNK RKAWKQREGS MNVNSSSTSL  180
SDLSGGFMST EAHKSHSVPS YILPRRTYLT CVQKKKLKEK VRAICSKTPI YGCVMKKTSI  240
EGKPQTMDIS REYADVYLPF DGQTLLLQHR GKSWEVWCQI KKSKSNLRAK RLVKGWKQFA  300
RDNNLQVGDL CLFELLENRE YAMNVDIIGA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG082300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796557.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2S3IK340.0A0A2S3IK34_9POAL; Uncharacterized protein
STRINGPavir.Ib03970.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein