PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG082400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 160aa    MW: 16671.3 Da    PI: 6.1152
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG082400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.5e-2369126258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 
                          +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+ ++ ++Yeg H+h
  Pavir.9KG082400.1.p  69 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 126
                          7******************************************985789********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2462129IPR003657WRKY domain
PROSITE profilePS5081118.64763129IPR003657WRKY domain
SuperFamilySSF1182903.01E-2164129IPR003657WRKY domain
SMARTSM007747.8E-2568128IPR003657WRKY domain
PfamPF031068.1E-2169126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASSSSSSQP NAIGSAGDRN QEKEAEAVVA AAAEAEAVVA EVEVEVEAAA AAAEASSETG  60
NGSQLVMPED GYEWKKYGQK FIKNIQKIRS YFRCRHRLCG AKKKVEWHPS DPSGALRVVY  120
EGAHQHGSPP SSSAAADAAA GASNKYELGA QYFGGARPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG082400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706332e-85EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791517.11e-67WRKY transcription factor 23-like isoform X3
TrEMBLA0A3L6S8318e-69A0A3L6S831_PANMI; Putative WRKY transcription factor 33
STRINGSi038001m4e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-14WRKY DNA-binding protein 48