PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG084500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 874aa MW: 95949.3 Da PI: 6.5144

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG084500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.9	1.2e-31	86	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwe 77 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w Pavir.9KG084500.2.p 86 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradaadagdedSARGRRTRAVTRVGCKAMIRVKKQDNGRWT 175 ********************************************************999999********************** PP FAR1 78 vtkleleHnHelap 91 vtkle+ HnH+l+p Pavir.9KG084500.2.p 176 VTKLETAHNHPLVP 189 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-29	86	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-21	305	396	IPR018289	MULE transposase domain
Pfam	PF04434	4.9E-10	581	618	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.855	583	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.1E-8	596	623	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MERGAGSEQG SPESEMGDGD SVGYGAEMEV DAGSGSAGAS APASSASASA SASASASAYA 60 ARASAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA 120 KEGFRTYRGK NEVARADAAD AGDEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWTVTKLE 180 TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FVGHRNGGTL LSIEPPQSPL IPSVPQTSIA 240 QVVPQYVSDG IGNGTRVILD YVKRMQAEEP AFFYAMQFVE GRPVGNVFWA DARARTAYKD 300 FGDAIVLDDY FKRSKHEFPL VAFTGVNHHC QPVLFGCAII ADNNEASFVW LFETFLLAMS 360 GQHPASLTME HDNALQSAAV KVFPLTRFQF CKWHIFNEAH DKLSHLLNVF PSFHEDFINC 420 INMSETIDEF EANLKALISK VSSQNTEWLN SMYNCRHKWV PVYLRDTFFG DVALKQQCAT 480 RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSPPDIKTS SPIERQGAES 540 YTRSMFLKFQ QELIDASVYT ADMIKEEGSV STYIVTKSEG SEKPVTVQFS SSGSSATCSC 600 QMFEYFGIVC RHILAVFGVR GVSVLPSQYF LKRWTKNAMD RSSSKKVDAV SRVEEPKEEQ 660 SSAEDDEQSP TWRYNSLCRE ALRYAEQGAS SLEVYIVAMQ ALQEAANRVN MAKRGIGQVA 720 PLAVMPIAAQ APENFGKIQE ISSNNKQKKR KRNSSSSREN ATSNQLMYVQ QPVNFLFVAS 780 GSSSALQGPS QLVAAAPVSL STQYGQTSGA NNSVDDNIPP ASVVDKFSGL PDRNASASAP 840 SLGNLQGGET KSTGAASQIK ESGVTESRVR NFI*

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MERGAGSEQG SPESEMGDGD SVGYGAEMEV DAGSGSAGAS APASSASASA SASASASAYA  60
ARASAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA  120
KEGFRTYRGK NEVARADAAD AGDEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWTVTKLE  180
TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FVGHRNGGTL LSIEPPQSPL IPSVPQTSIA  240
QVVPQYVSDG IGNGTRVILD YVKRMQAEEP AFFYAMQFVE GRPVGNVFWA DARARTAYKD  300
FGDAIVLDDY FKRSKHEFPL VAFTGVNHHC QPVLFGCAII ADNNEASFVW LFETFLLAMS  360
GQHPASLTME HDNALQSAAV KVFPLTRFQF CKWHIFNEAH DKLSHLLNVF PSFHEDFINC  420
INMSETIDEF EANLKALISK VSSQNTEWLN SMYNCRHKWV PVYLRDTFFG DVALKQQCAT  480
RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSPPDIKTS SPIERQGAES  540
YTRSMFLKFQ QELIDASVYT ADMIKEEGSV STYIVTKSEG SEKPVTVQFS SSGSSATCSC  600
QMFEYFGIVC RHILAVFGVR GVSVLPSQYF LKRWTKNAMD RSSSKKVDAV SRVEEPKEEQ  660
SSAEDDEQSP TWRYNSLCRE ALRYAEQGAS SLEVYIVAMQ ALQEAANRVN MAKRGIGQVA  720
PLAVMPIAAQ APENFGKIQE ISSNNKQKKR KRNSSSSREN ATSNQLMYVQ QPVNFLFVAS  780
GSSSALQGPS QLVAAAPVSL STQYGQTSGA NNSVDDNIPP ASVVDKFSGL PDRNASASAP  840
SLGNLQGGET KSTGAASQIK ESGVTESRVR NFI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7750	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG084500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466201	0.0	AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794565.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2T8I184	0.0	A0A2T8I184_9POAL; Uncharacterized protein
STRING	Pavir.Ia01109.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-164	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG084500.2.p