PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG084500.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 768aa    MW: 85192.5 Da    PI: 6.6002
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG084500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.21e-3186189291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwe 77 
                          fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+              + + rrtra+tr+gCka+++vkk+++g+w 
  Pavir.9KG084500.3.p  86 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradaadagdedSARGRRTRAVTRVGCKAMIRVKKQDNGRWT 175
                          **********************************************************999999************************** PP

                 FAR1  78 vtkleleHnHelap 91 
                          vtkle+ HnH+l+p
  Pavir.9KG084500.3.p 176 VTKLETAHNHPLVP 189
                          ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2986189IPR004330FAR1 DNA binding domain
PfamPF105511.8E-21305396IPR018289MULE transposase domain
PfamPF044344.2E-10581618IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.855583621IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-8596623IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MERGAGSEQG SPESEMGDGD SVGYGAEMEV DAGSGSAGAS APASSASASA SASASASAYA  60
ARASAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA  120
KEGFRTYRGK NEVARADAAD AGDEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWTVTKLE  180
TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FVGHRNGGTL LSIEPPQSPL IPSVPQTSIA  240
QVVPQYVSDG IGNGTRVILD YVKRMQAEEP AFFYAMQFVE GRPVGNVFWA DARARTAYKD  300
FGDAIVLDDY FKRSKHEFPL VAFTGVNHHC QPVLFGCAII ADNNEASFVW LFETFLLAMS  360
GQHPASLTME HDNALQSAAV KVFPLTRFQF CKWHIFNEAH DKLSHLLNVF PSFHEDFINC  420
INMSETIDEF EANLKALISK VSSQNTEWLN SMYNCRHKWV PVYLRDTFFG DVALKQQCAT  480
RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSPPDIKTS SPIERQGAES  540
YTRSMFLKFQ QELIDASVYT ADMIKEEGSV STYIVTKSEG SEKPVTVQFS SSGSSATCSC  600
QMFEYFGIVC RHILAVFGVR GVSVLPSQYF LKRWTKNAMD RSSSKKVDAV SRVEEPKEEQ  660
SSAEDDEQSP TWRYNSLCRE ALRYAEQGAS SLEVYIVAMQ ALQEAANRVN MAKRGIGQVA  720
PLAVMPIAAQ APENFGKIQE ISSNNKQKKR KRNSSSSREN ATSNQLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG084500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794565.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3L6TN540.0A0A3L6TN54_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.Ia01109.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-165FAR1-related sequence 5