PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG085700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 209aa    MW: 23549 Da    PI: 4.9345
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.74e-213488455
              G2-like  4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55
                         lrW+ +LH  Fv+av+  GG+++A P   k+++e+m+v gLt++++kSHLQ+YR 
  Pavir.9KG085700.1.p 34 LRWSDDLHMIFVKAVAYQGGPHEAKPtalKKMMETMGVRGLTIQNIKSHLQRYRE 88
                         89************************77778899999*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.02E-102990IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-203089IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-153489IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSKNKPTQRN DVTIMSSMLA SRIICAMHPA RSYLRWSDDL HMIFVKAVAY QGGPHEAKPT  60
ALKKMMETMG VRGLTIQNIK SHLQRYREKC ELGAEAPAVE VPGTTSLCKE ALNQASKILM  120
DTDAVMLEME IVNNFLMDDI EMVDNNFSLD RVQMMEKELM DEIQVAYSHS DNEANFSCPQ  180
LIEHNSQYPQ AVIDEYIADL ANYAFGHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797593.11e-100myb family transcription factor PHL12-like
RefseqXP_025797594.11e-100myb family transcription factor PHL12-like
TrEMBLA0A2T7C3061e-102A0A2T7C306_9POAL; Uncharacterized protein
STRINGSb01g013080.12e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.12e-16G2-like family protein