PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG089900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 648aa    MW: 71784.5 Da    PI: 4.746
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG089900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN35079.2e-155784671354
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa.....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                          eel++rmw+d+m+lkrl+e ++ + +d+ aa      g++k ++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+
  Pavir.9KG089900.1.p  78 EELERRMWRDRMKLKRLRELQQTRGKDQAAAgggggDGSSKPRQSQEQARRKKMSRAQDGILKYMLKMMEVCRAQGFVYGIIPEKGKPVS 167
                          8**********************9999999999988889999************************************************ PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH--- CS
                 EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPt 175
                          gasd+LraWWkekv+fdrngpaai+kyqa+n++++ e++l + + +++hsl+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWPt
  Pavir.9KG089900.1.p 168 GASDNLRAWWKEKVRFDRNGPAAIAKYQADNAVPGAENELAS-GAASPHSLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPT 256
                          ****************************************66.*********************************************** PP

                          S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX CS
                 EIN3 176 GkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss 265
                          G+e+ww+elg++kdq +ppykkphdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake  ++l+v++qee+++ ++++  +
  Pavir.9KG089900.1.p 257 GDEEWWPELGIPKDQVPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELYLKLQPGAR 346
                          ***************************************************************************************944 PP

                          .....XXXX..XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX............................XXXXXXXXXXXXXXXXXX CS
                 EIN3 266 .....slrk..qspkvtlsceqkedvegkkeskikhvqavktta............................gfpvvrkrkkkpsesakv 320
                                     ++ ++++s++ ++dv+  +e k  ++  +k +                             ++++++kr+++ + +   
  Pavir.9KG089900.1.p 347 ppasaG--GiaSAISFNASSS-EYDVDIADECKGDEAGDQKSAVadptafnlgaamlsdkflmpppmkeetaEVEFIQKRNAPAAAEPEL 433
                          344322..2325555555555.99***888888777777776557888999******************************987665555 PP

                          XXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 321 sskevsrtcqssqfrgsetelifadknsisqney 354
                          + ++ ++tc++ q+++s+++ +f d+n++++++y
  Pavir.9KG089900.1.p 434 MLNNRVYTCNNVQCPHSDYSYGFLDRNARNSHQY 467
                          555567**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.6E-13278335No hitNo description
Gene3DG3DSA:1.10.3180.104.7E-74209343IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-61214338IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MMGGGLMMDQ GMVFPGVHNF VDLLQQNGDK NLGFGSLMPQ TSSGDQCVMG EGDLVDPPPE  60
SFPDAGEDDS DDDVEDIEEL ERRMWRDRMK LKRLRELQQT RGKDQAAAGG GGGDGSSKPR  120
QSQEQARRKK MSRAQDGILK YMLKMMEVCR AQGFVYGIIP EKGKPVSGAS DNLRAWWKEK  180
VRFDRNGPAA IAKYQADNAV PGAENELASG AASPHSLQEL QDTTLGSLLS ALMQHCDPPQ  240
RRYPLEKGVP PPWWPTGDEE WWPELGIPKD QVPPPYKKPH DLKKAWKVSV LTAVIKHMSP  300
DIEKIRRLVR QSKCLQDKMT AKEISTWLAV VKQEEELYLK LQPGARPPAS AGGIASAISF  360
NASSSEYDVD IADECKGDEA GDQKSAVADP TAFNLGAAML SDKFLMPPPM KEETAEVEFI  420
QKRNAPAAAE PELMLNNRVY TCNNVQCPHS DYSYGFLDRN ARNSHQYTCK YNDPLPQSSE  480
NKPPPPPPPP QSQAFQGSFS QPNQALNNLD FSLPMDGQRS IAELMNMYDN NFMANKSMSS  540
DSVSIMERPN ALPPRMQMDD GFFGQGNGVF DDVNSMMQQP QQAPVQQQQQ QPAQQQFFIR  600
DDAPYGSQMG DITGTSEFRF GSGFNMSSNV DYPGAAQQKN DGPNWYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-722123431132Protein ETHYLENE INSENSITIVE 3
4zds_B3e-722123431132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8720.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf blades, leaf sheaths, stems, internodes, anthers of young flowers, and developing grains. {ECO:0000269|PubMed:25995326}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:16786297, ECO:0000269|PubMed:25995326, ECO:0000269|PubMed:27701783, ECO:0000269|PubMed:28829777, ECO:0000269|PubMed:30002253}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG089900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:27701783}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1568450.0KT156845.1 Zea mays subsp. mays transcription factor EIL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984528.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ10M410.0EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a
TrEMBLK4A6W10.0K4A6W1_SETIT; Uncharacterized protein
STRINGPavir.Ib01512.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.11e-156EIL family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]
  3. Yang C, et al.
    Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
    Plant J., 2017. 89(2): p. 338-353
    [PMID:27701783]
  4. Qin H, et al.
    The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
    PLoS Genet., 2017. 13(8): p. e1006955
    [PMID:28829777]
  5. Kuroha T, et al.
    Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
    Science, 2018. 361(6398): p. 181-186
    [PMID:30002253]