PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG090800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 311aa    MW: 32008.7 Da    PI: 8.0501
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.72.6e-153292257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Pavir.9KG090800.1.p 32 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 92
                         89*****************99*************************************997 PP
2Wus_type_Homeobox106.91.2e-343194265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Pavir.9KG090800.1.p 31 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 94
                         589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1426100IPR009057Homeodomain-like
PROSITE profilePS5007111.2562893IPR001356Homeobox domain
SMARTSM003891.2E-63097IPR001356Homeobox domain
PfamPF000464.9E-133292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-832100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEGSSNSPDR QSSGGSPEER GSGGRGTGEP VRSRWTPKPE QILILESIFN SGMVNPPKDE  60
TVRIRKLLER FGAVGDANVF YWFQNRRSRS RRRQRQMQAA ATAAAAAASS AAQSSPVASP  120
IVGLPSGAVQ YPLAMGGSAS ICQYEQQASS SSSSGSTGGG SSLGLFALGP GVPGTGAGYL  180
QASCGASSPL ASGLMGDVDS GGGGNDDLFA ISRQMGFAES PVASSSVAPS PAGHQHQQYY  240
SCQSPAATIT VFINGVPKEV PRGPIDLRAM FGQDVMLVHS TGALLPVNDY GILTQSLQMG  300
ESYFLVARPT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG090800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284130.0KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796618.11e-163WUSCHEL-related homeobox 6-like
SwissprotA2XG771e-107WOX6_ORYSI; WUSCHEL-related homeobox 6
SwissprotQ10M291e-107WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBLA0A2S3IR141e-162A0A2S3IR14_9POAL; Uncharacterized protein
STRINGPavir.Ib01521.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.24e-32WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]