PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG091800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 351aa    MW: 38857.8 Da    PI: 6.4557
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG091800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-55201471129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yL++k+ +++ +   vi evd++k+ePw+Lp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdk
  Pavir.9KG091800.1.p  20 LPPGFRFHPTDEEIITHYLTHKALDHRYTS-GVIGEVDLNKCEPWHLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDK 108
                          79*************************888.99***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  Pavir.9KG091800.1.p 109 EIFRGRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 147
                          ************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6315170IPR003441NAC domain
PROSITE profilePS5100558.55820170IPR003441NAC domain
PfamPF023652.2E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGQLDL PPGFRFHPTD EEIITHYLTH KALDHRYTSG VIGEVDLNKC  60
EPWHLPGRAK MGEKEWYFFC HKDRKYPTGT RTNRATETGY WKATGKDKEI FRGRGILVGM  120
KKTLVFYRGR APRGEKTGWV MHEFRLEGKL PHPLPRSAKD EWAVCKVFNK ELAARAEPMA  180
AGAELERIGS LGFISELLDN AELPPLMDPS FGGEVDEMVD FKGASTSAHA AAPGASYLPV  240
KMEEHPPLQY HNHLQQQAPP MFYSSQYFSL PAVNSGDLTP AIRRYCKAEQ VASGQTTSVL  300
SPSRETGLST DPNAGGGCAE ISSAATPSSS HQFPHDLDDP LLHVADFWKY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53111758170NO APICAL MERISTEM PROTEIN
1ut4_B2e-53111758170NO APICAL MERISTEM PROTEIN
1ut7_A2e-53111758170NO APICAL MERISTEM PROTEIN
1ut7_B2e-53111758170NO APICAL MERISTEM PROTEIN
3swm_A2e-531117511173NAC domain-containing protein 19
3swm_B2e-531117511173NAC domain-containing protein 19
3swm_C2e-531117511173NAC domain-containing protein 19
3swm_D2e-531117511173NAC domain-containing protein 19
3swp_A2e-531117511173NAC domain-containing protein 19
3swp_B2e-531117511173NAC domain-containing protein 19
3swp_C2e-531117511173NAC domain-containing protein 19
3swp_D2e-531117511173NAC domain-containing protein 19
4dul_A2e-53111758170NAC domain-containing protein 19
4dul_B2e-53111758170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102580.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG091800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984514.10.0NAC domain-containing protein 79
SwissprotQ9FK442e-96NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A368SRF40.0A0A368SRF4_SETIT; Uncharacterized protein
STRINGPavir.Ib01526.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-97Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]