PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG094400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 194aa    MW: 19267.1 Da    PI: 11.3247
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG094400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof62.96e-2015492660
               zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                         +  Pr+fC+aCrryWt GG+lrnvP+Gg++rk+ +
  Pavir.9KG094400.1.p 15 VLSPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 49
                         568****************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.656149IPR003851Zinc finger, Dof-type
PfamPF027015.0E-151747IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-91846IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPSDAKTIRA TALQVLSPRH FCRACRRYWT LGGSLRNVPI GGSTRKRPRL AHHHHQPPPA  60
ARRAPVFGLG LGGGVPPLPS SAQAGGLLGS LFALGATGPL LEGPAAPPLL EGRGAGFDLG  120
LGLPAGGTLG GGGGGPASGA SSSGLFWPAG LLDNDSVDPW KMLPSAAMWP DFSAAAAAAP  180
QTGGLLHGGA QLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG094400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824068e-52KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698063.11e-52dof zinc finger protein DOF1.6
TrEMBLA0A2T7C3R22e-61A0A2T7C3R2_9POAL; Uncharacterized protein
STRINGPavir.Ib03954.1.p5e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-12Dof family protein