PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG095600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 435aa    MW: 49162.2 Da    PI: 9.9357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG095600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15123212199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+   +   ++r+++p kfa+++  k ++  ++tl+  +g + +v +   +++++ vl++GW+ F + ++++  D +vF+++g+  f
  Pavir.9KG095600.1.p 123 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KITLKVYNGSTCTVVV--ARYQNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--F 203
                          67777...5556678********999766444..79999999********..*******************************9885..5 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++ v vf+ 
  Pavir.9KG095600.1.p 204 QFEVLVFDP 212
                          558888875 PP
2B351.32.2e-163524341499
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          + l + +k+a ++   ++es+ l+l+ ++g++W+v l+ + k++++ +++GWk+Fv++n+++ gD+++F+l ++ +  +++++++rk
  Pavir.9KG095600.1.p 352 CYLGICRKYAHQYL--PHESQILRLQ-QHGKVWQVLLC-TTKRNSIQFSRGWKKFVSDNKMQIGDICLFELLKDeKMLTMNIHIIRK 434
                          7899999**96663..4566667755.6*********5.66667899***********************99887999999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-22116215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-21117215IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955120213IPR003340B3 DNA binding domain
CDDcd100172.19E-17121211No hitNo description
PfamPF023621.2E-11123211IPR003340B3 DNA binding domain
SMARTSM010197.2E-8123213IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-20333433IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-22333433IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-17336433No hitNo description
SMARTSM010197.6E-5337433IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266339434IPR003340B3 DNA binding domain
PfamPF023623.8E-15352434IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVISRRSSVS GGAATPFPAL YGRRAITVPR AAAGAGPGAP KRRTATCASP SPHHLQLPSS  60
TRSLRPPSGG GRARVVASST FRRRLQSLLS ELSQVSLDHT RNNSCERCGE WDFRDMDDRH  120
KYFFKVMMGD FRSRMTIPDK FAQRFRDKIR GKITLKVYNG STCTVVVARY QNKLVLEAGW  180
EAFISTHDIR LADLLVFRYN GNFQFEVLVF DPSCCVKESS NVAQSCCDHV RVQQRHRNLL  240
DSSSVSDDDQ ETMQSSGSEY PTPGEKKGPN QGTKKTNTSS STCHLNATEL ADLYSSENDQ  300
EISSMTSYIF SPFTHLTQMQ RMKVEKRVQD ICSSIPIFGS VMTKCNITRN PCYLGICRKY  360
AHQYLPHESQ ILRLQQHGKV WQVLLCTTKR NSIQFSRGWK KFVSDNKMQI GDICLFELLK  420
DEKMLTMNIH IIRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG095600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796316.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796317.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796318.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2T7C3P30.0A0A2T7C3P3_9POAL; Uncharacterized protein
STRINGPavir.J12984.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-26B3 family protein