PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG095700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 152aa    MW: 17319.1 Da    PI: 10.4687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG095700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-1459145898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                          s+ + +  l++pk+++++h g k++    ++ +++++++e kli+ +   + + ++GW++Fvkan++++g ++vF+l ++ ++ +++v++
  Pavir.9KG095700.1.p  59 SNIHGRFDLIFPKQYIARHLGWKKR---TIFLQRESQRYEAKLIIGNV--ARLTKGGWRRFVKANDVDVGNICVFELLKEgDTCTMNVHI 143
                          555667789**********545333...4566778999*****55333..346789********************99887888999999 PP

                          E- CS
                   B3  97 fr 98 
                          +r
  Pavir.9KG095700.1.p 144 IR 145
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1645145IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-1647145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-1350145No hitNo description
PROSITE profilePS508639.7752147IPR003340B3 DNA binding domain
SMARTSM010196.2E-556147IPR003340B3 DNA binding domain
PfamPF023621.9E-1258145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAGNSLLSDN NGVQLRDQHR PYAISQKYRL NENQKKKIDE RLKCMNSGAP ISVAVICKSN  60
IHGRFDLIFP KQYIARHLGW KKRTIFLQRE SQRYEAKLII GNVARLTKGG WRRFVKANDV  120
DVGNICVFEL LKEGDTCTMN VHIIRSFEVA G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG095700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SHE11e-38A0A368SHE1_SETIT; Uncharacterized protein
TrEMBLK4ALK66e-40K4ALK6_SETIT; Uncharacterized protein
STRINGPavir.J26924.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-07B3 family protein