PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG096500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 306aa    MW: 34680.6 Da    PI: 10.3113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG096500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.4e-17397799
                         .-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
                   B3  7 psdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94
                         ps+v ++   lv+p+++a+++     +++ +tl+   ++++W+ k+ +rk + + ++ + W++Fvk+n+++egD+++F+ + +  ++f+++v
  Pavir.9KG096500.1.p  3 PSNVKSKyPSLVIPNDYAAAYFPH--NNQFVTLQRpGKNKKWRPKFYIRKDRAANMFVGHWSDFVKDNHVREGDICIFQPVkNAgTTFTMTV 92
                         55555555569**********533..3446999894566*******77999999*************************6625579999999 PP

                         EEE-S CS
                   B3 95 kvfrk 99
                         +++rk
  Pavir.9KG096500.1.p 93 HLIRK 97
                         99987 PP
2B358.71e-18207304499
                          E-..-HHHHT..T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   4 vltpsdvlks..grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          +l++s+v+++  ++l + k++a+e+  +g   e++   l+  ++ +W+v++   +++s + +lt GW++Fv++n+L++ D+++F+ ++++
  Pavir.9KG096500.1.p 207 ILSNSNVGTNstCILAFGKQYATEYlpDG---EQTLTLLRKGKSTTWKVRMVPrSGGSHGQMLTVGWRDFVQDNRLEVEDICLFQQMDDK 293
                          67788888877799999********5432...333444555888*******544555555*************************9999* PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          + +++v ++r+
  Pavir.9KG096500.1.p 294 RLTMTVDIIRH 304
                          ********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-181100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-18196No hitNo description
Gene3DG3DSA:2.40.330.101.4E-18196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041198IPR003340B3 DNA binding domain
PfamPF023622.0E-15397IPR003340B3 DNA binding domain
SMARTSM010192.7E-9598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-20194299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-17197303IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-15202303No hitNo description
SMARTSM010193.0E-8204305IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138204305IPR003340B3 DNA binding domain
PfamPF023621.3E-16208304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKPSNVKSKY PSLVIPNDYA AAYFPHNNQF VTLQRPGKNK KWRPKFYIRK DRAANMFVGH  60
WSDFVKDNHV REGDICIFQP VKNAGTTFTM TVHLIRKPKI DMLDQNRNCP GGVGSSRGRT  120
RTKVNDHKTV SSSEGRPKAK VTLTTRVKEE PLHHYQGPLE SDDSGQGQPS KYPYILSGYA  180
HLNGEQRKKV EEIVRSIQSR VPIYVAILSN SNVGTNSTCI LAFGKQYATE YLPDGEQTLT  240
LLRKGKSTTW KVRMVPRSGG SHGQMLTVGW RDFVQDNRLE VEDICLFQQM DDKRLTMTVD  300
IIRHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170880.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG096500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6TV981e-156A0A3L6TV98_PANMI; Uncharacterized protein
STRINGPavir.Ib03965.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-09B3 family protein