PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG096600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 261aa MW: 29559.1 Da PI: 5.118

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG096600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.4	1.1e-17	51	136	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ +++ ++ +++p +f++++ g+ s + +e+++g+++ vk+ k+ +++vl+ GW+eF +a+++ke+D+++F+++++s+f + Pavir.9KG096600.1.p 51 QM---SANYRRSMIIPDRFMNHFRGE--LSESIEIESPDGNVYGVKV--IKHMDKIVLQCGWEEFIDAHHIKENDSLLFQHIENSRF--K 131 44...44445569*****777766..6678***********..*******************************99999..7 PP EEEE- CS B3 94 vkvfr 98 v +++ Pavir.9KG096600.1.p 132 VLILD 136 77766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.28E-21	41	140	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.0E-20	44	140	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.816	45	138	IPR003340	B3 DNA binding domain
SMART	SM01019	7.6E-11	48	138	IPR003340	B3 DNA binding domain
CDD	cd10017	4.24E-18	49	136	No hit	No description
Pfam	PF02362	4.9E-16	50	136	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFAELGYIES LSSFSERVNI SGHGSRMKKS CVCCQRYMDH LDGKMKCFLS QMSANYRRSM 60 IIPDRFMNHF RGELSESIEI ESPDGNVYGV KVIKHMDKIV LQCGWEEFID AHHIKENDSL 120 LFQHIENSRF KVLILDSDGC EKVFSCSGIK TTTIAQEQAA EYVDISDTAH DYTKKFSGIR 180 KRSTSCQRVT QNHRRKVAKV ASAASSCEES GQDTEGTAGY ESSFDLDDTE TNPEPDYVLS 240 RISNLSEEQE EKVEELIKEI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG096600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791593.1	1e-145	B3 domain-containing protein Os03g0620400-like
Swissprot	Q851W5	2e-83	Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBL	A0A2T7C3P1	1e-155	A0A2T7C3P1_9POAL; Uncharacterized protein
STRING	Pavir.Ib03965.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	1e-14	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG096600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]