PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG099800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 477aa    MW: 53461.8 Da    PI: 9.5864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG099800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15190280797
                          .-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   7 psdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +s++ ++   +v++k +a e+     +++ +tle +   ++W  +l +r ++++y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+  v
  Pavir.9KG099800.2.p 190 KSSTKREnPAVVISKGYAVEYFPR--KTQIITLERPGCkKKWHPRLHIRPNRSGYILYGHWKNFVRDNKLKTNDICIFQPIKGKKFRVIV 277
                          44443332568**********744..55589999966569******99*******************************99989999999 PP

                          EEE CS
                   B3  95 kvf 97 
                          +++
  Pavir.9KG099800.2.p 278 HLL 280
                          876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-20175277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-20178280IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-17182278No hitNo description
SMARTSM010191.0E-9184283IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997185283IPR003340B3 DNA binding domain
PfamPF023621.4E-14188280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-11371473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-8372471IPR015300DNA-binding pseudobarrel domain
CDDcd100179.31E-9377471No hitNo description
PROSITE profilePS508637.161379473IPR003340B3 DNA binding domain
SMARTSM010190.018379473IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MCYVACSHVQ SSGGSLIKSA FDRGFRFQIY MAGRSCPKNK SCHCYKRCVD HPDGMMKCLL  60
SHANSNRKHG TTIIQIFGSC CCNKDSSCAP TKNGIMVREG SANSIDTSKG SSDHASQSSA  120
NETPESLSSS EESDSPSESQ SSQLGHCKTS TKLWIKSNKR DLTPEQEEKI DDLVKKIQPQ  180
FPVLVVQMKK SSTKRENPAV VISKGYAVEY FPRKTQIITL ERPGCKKKWH PRLHIRPNRS  240
GYILYGHWKN FVRDNKLKTN DICIFQPIKG KKFRVIVHLL GEASTHSRSL RPRDSNNGCA  300
RKQSSAAHVH ENSSSRDKLL QLNHRQHHRV AKDVCASDDS GEPSHPPPFV VLRHTSLTPV  360
QEKAVDEEVK AIQSDVPIFV ANMSEEILGD NGTFSLDFAS RYAAPHFPDG KQTLTLSQDG  420
WRKAWHIKML NRRVLPGELG EFAVDNRLRT GDLCLFEPMK ERLAMAVRII RSEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG099800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T7C3P50.0A0A2T7C3P5_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)