PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG101100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 74aa MW: 8234.39 Da PI: 9.8836

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG101100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.2e-06	52	70	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 C+ Cg++++ + nLk Hi Pavir.9KG101100.1.p 52 ACKRCGRCYTGQANLKAHI 70 6*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MVPARGRSPS PARRRNRHEG TAGVHAQVLL EAGNLVEEED AHLRKHLGKW WACKRCGRCY 60 TGQANLKAHI CDY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4606	1e-121	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG101100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ib03955.1.p	7e-48	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.9KG101100.1.p