PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG101200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 308aa MW: 31179.2 Da PI: 8.51

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG101200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	81.6	8.7e-26	95	134	5	44
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG 44 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG Pavir.9KG101200.1.p 95 GEQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGG 134 579************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	21.949	96	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-22	96	134	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-17	97	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAGQVMEAHH QQGQLQPPAG TPPFAPLTLG AGCKHDVHHH LTATTAATAM AVPGSNAAAA 60 ADMAAYLQQL QDAAAAAAAE ASKQQQQQSG GAARGEQCPR CASHDTKFCY YNNYNTSQPR 120 HFCRACRRYW TLGGLPPQRP HRRRPRLAHH HHQPPTAARR APVFGLGLGG GVPPLPSSAQ 180 AAGLLGSLFA LGATGPLLEG PAAPPLLEGR GAGFDLGLGL PAGGTLGGGG GEAGMQVQGL 240 GLRGSGGGCP ASGASSSGLF WPAGLLDNDS VDTWKMLPSA AMWPDFSAAA AAAPQTGWLL 300 HGGAQLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG101200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	1e-79	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698063.1	5e-87	dof zinc finger protein DOF1.6
TrEMBL	A0A2T7C3R2	3e-94	A0A2T7C3R2_9POAL; Uncharacterized protein
STRING	GRMZM2G061292_P01	2e-80	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-17	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.9KG101200.1.p