PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG103700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 254aa    MW: 25941.2 Da    PI: 9.0098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG103700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001984106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F+++  L  H ++H
  Pavir.9KG103700.1.p  84 HRCSVCGKAFPSHQALGGHKSSH 106
                          79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01684106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.59384111IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-984106No hitNo description
PfamPF139126.6E-1184108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-9158185No hitNo description
PfamPF139123.9E-13162187IPR007087Zinc finger, C2H2
SMARTSM003550.18163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAAAVGAARD APATPWTLPE EGAVSGSARE GSADGWARRK RSRSRRRLRR AAPTEEEHLA  60
VCLLMLARGQ RDARAPPAAQ QQEHRCSVCG KAFPSHQALG GHKSSHRARP PPPPAAPTPA  120
AEEEPAAAPA PPAAAVPSAS PAASSSTSGA AAGSISGGSG RVHECSVCRK TFPTGQALGG  180
HKRCHYEGAG GGATTTNVPS TSAGLMSCRG FDLNVPALPD IITAGDRCMP AAEEEDEVLS  240
PLAFKKQRLM ILA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13846RKRSRSRRR
23848RKRSRSRRRLR
33944KRSRSR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG103700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794414.12e-94zinc finger protein 1-like
SwissprotQ424309e-47ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3L6TLR62e-99A0A3L6TLR6_PANMI; Zinc finger protein 1-like
STRINGPavir.J15423.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-29salt tolerance zinc finger