PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG104000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 242aa MW: 24656.8 Da PI: 7.1744

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG104000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.8	9.2e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++ Pavir.9KG104000.1.p 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNW 91 6*******************9999888899****************************************************** PP DUF260 86 qleqlkaelallke 99 +l+q++a+++l++e Pavir.9KG104000.1.p 92 DLCQAAADAVLRGE 105 *****9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.729	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL SAIPAAFTDR 120 DMDGLYGSVG AAASSSSPEN SSSAPSRKRG RNNNNGGLAF VNAAAAAAVP AAGACQNPPA 180 GLLQSCELDL CLTPASSPMA GSGRRGCGGA SDEYSATTTC EDLQATGDVE ARAPALLNLF 240 H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG104000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288002	1e-161	AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982442.1	1e-129	LOB domain-containing protein 37
TrEMBL	A0A3L6TGQ7	1e-146	A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRING	Pavir.J16587.1.p	1e-173	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8450	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	7e-56	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Pavir.9KG104000.1.p