PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG104100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 393aa    MW: 41778.3 Da    PI: 4.713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-1960109255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Pavir.9KG104100.1.p  60 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 109
                          789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-2859116No hitNo description
SMARTSM003808.7E-3560123IPR001471AP2/ERF domain
PROSITE profilePS5103219.59960117IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1960117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2760116IPR001471AP2/ERF domain
PfamPF008479.8E-1460109IPR001471AP2/ERF domain
PRINTSPR003675.6E-86172IPR001471AP2/ERF domain
PRINTSPR003675.6E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MALKRKASPG LADDLLMISC GGDHSHAASN SFAPAARSRE SWAEAAVGAV AVAQPRGRKR  60
FVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGS NTRTNFWPRA  120
AGAAAFTLQQ PPPPPSALPS KVTNLLLLRL KKARGSAGAV THAQQEAPAQ HRQAQQGHNG  180
GQDEYSFQVD DFLSYDGACD ELHVVKHEEA EDEAGDEEEA PLDFGFMDKQ PSPAREAGGA  240
EGLYSPFEMV ADELGGAAAE VEPAGPINEV MKRMKYERKI SASLYALSGV SECLRLRLGD  300
VGGDHVGAGR RELLALSGLR DACRKQQQEE EEVVDEGGNA VGYDESSSSS ISNSTSSEAA  360
SSSPEAASSP QDAKAAESDM LLWSSLDLPP IC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG104100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277049e-84KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796844.10.0uncharacterized protein LOC112876880
TrEMBLA0A2T7C3V40.0A0A2T7C3V4_9POAL; Uncharacterized protein
STRINGPavir.Ia01300.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11