PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG124900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 188aa MW: 22371.4 Da PI: 8.1967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG124900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	5.6e-09	12	47	2	37
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 +Yn+YA+++GFs+r+++s++sk+++ k f C+k Pavir.9KG124900.1.p 12 YYNRYARHAGFSIRIDTSRESKKDNDKRKVIFICQK 47 8*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-7	12	48	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MTFSTLQDAR VYYNRYARHA GFSIRIDTSR ESKKDNDKRK VIFICQKLKT APSQWEVVHF 60 EREHNHECVK KFSLTKYMKS HREIPAEEKE FIKFLHGCCI TTTRAYQIMV ELYGGIENCP 120 YTEGDAKNLR VEYRAEYRGK DMKATLDHFE ELKKEDLDFI YSYTLDKFDR VENLFWVDGA 180 ARKSYEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG124900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6TA85	2e-92	A0A3L6TA85_PANMI; Uncharacterized protein
STRING	Pavir.J17812.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-18	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG124900.1.p