PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG129600.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 580aa    MW: 61214.5 Da    PI: 6.5844
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG129600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix1101.5e-34255340187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Pavir.9KG129600.5.p 255 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYNRNAKRCKEKWENINKYFKKVKERNKKR-PEDSKTCPYFHQLDA 340
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0093252314IPR001005SANT/Myb domain
PROSITE profilePS500907.155254312IPR017877Myb-like domain
PfamPF138373.5E-24254341No hitNo description
Gene3DG3DSA:1.10.10.602.6E-4254311IPR009057Homeodomain-like
CDDcd122031.29E-28255319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MPAMAFGNQM SISTSNTEDY SDDEDSDDEG TQELGGGADE RGKRKRVSSA GGGGGGCGKM  60
MRFFEGLMKQ VMERQEAMQQ RFLEAIEKRE QDRMIREEAW RRQEMTRLAR EQEILAQERA  120
MAASRDAAVL SFIQKITGQT IPMPSIAAPT ISAMPPPSHP KPPPPQPHPT PIASASPAAP  180
PPAPHPPVAS QPPPAAQQPQ PSPQQQRSPI PATPQAPATQ QKQSTDIVMT PAETPHADTP  240
GGHDGSGGGG PTSSRWPKAE VHALIQLRSN LDTRYQEAGP KGPLWEEISA GMRRMGYNRN  300
AKRCKEKWEN INKYFKKVKE RNKKRPEDSK TCPYFHQLDA LYRNKAALMS SSGAGGGGGP  360
AAHASGAPPT QQPQETVTVT AAAPISQTPP PPPTTTLPSP SSQHAAKNGG GSNNAGSGNG  420
GGASERGASG GGSGATQAQA SNGSVAASRF FGEGGAGAGV SGSAAKKPED IMKEMMEQQR  480
HRPQAAVSGY NRIDGADSDN MDEDDYDDDE DDDDDVDGNK MQYEIQFQRQ HQPPPPQHQH  540
QNVVRPSSGG GAGNPPGTNA PRTAAAATTT AGSFLGMVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33020.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG129600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-133BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2T7C4N00.0A0A2T7C4N0_9POAL; Uncharacterized protein
STRINGPavir.Ib03751.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-51Trihelix family protein