PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG148500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 253aa MW: 25078.2 Da PI: 9.3274

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG148500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	101.9	3.8e-32	82	136	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC+s ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ Pavir.9KG148500.1.p 82 PRQCPRCQSGNTKFCYYNNYSRAQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 136 679**********************************************976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-29	83	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.9	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-16	90	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MRSSFPASPS SSASSHLSYL IPARPPPPPP PLAMGQGYCA AGGITVPASV AVDAASAAAV 60 APRQGARNAG AGGHPPLPRP PPRQCPRCQS GNTKFCYYNN YSRAQPRYLC KACRRHWTEG 120 GTLRDVPVGG GRKNRRGGSK GGPASAKASA SAAAAATMQG GAADTFPDLL RQLVHFQPGA 180 AAVGGGGYAI DLSAWQQMAA ATAPPQGPGD VSALGGAAAA AAAAAAAEAN CGALQYCGGW 240 QQDDMPGLDG AC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG148500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793526.1	5e-70	dof zinc finger protein DOF1.6-like
TrEMBL	A0A3L6SGF4	5e-69	A0A3L6SGF4_PANMI; Uncharacterized protein
STRING	Pavir.Ia01590.1.p	1e-75	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	2e-18	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG148500.1.p