PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG166800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 95aa MW: 10385.7 Da PI: 9.3975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG166800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8e-07	22	61	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +i + ++L+ llP+a ++ ++ a +L++++ YI+sL Pavir.9KG166800.1.p 22 QISDLVAKLQALLPEARLRSNDRVPSARVLQETCSYIRSL 61 789999*******8899*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-8	5	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.074	7	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-9	17	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MSSRQSRSRA SSGSTSRIKD EQISDLVAKL QALLPEARLR SNDRVPSARV LQETCSYIRS 60 LHREVDDLSD RLSELLATAD VSTAQAAVIR SLLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG166800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT836589	1e-88	CT836589.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z79, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983143.1	8e-46	transcription factor ILI7
Refseq	XP_025797606.1	8e-46	transcription factor ILI7
Swissprot	A2Z730	1e-43	ILI7_ORYSI; Transcription factor ILI7
Swissprot	Q338G6	1e-43	ILI7_ORYSJ; Transcription factor ILI7
TrEMBL	A0A2S3IMI6	2e-44	A0A2S3IMI6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C6W6	2e-44	A0A2T7C6W6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SFA9	2e-44	A0A3L6SFA9_PANMI; Transcription factor ILI7
TrEMBL	K4AH62	2e-44	K4AH62_SETIT; Uncharacterized protein
STRING	Pavir.Ib03462.1.p	7e-58	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2675	33	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	4e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG166800.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]