PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG167600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 249aa    MW: 27316.7 Da    PI: 5.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG167600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.6e-091964252
                  AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkk 52
                         +y+GV+  + +g+W+A I    + +g   +f++gkf ta  Aa a+++a ++
  Pavir.9KG167600.1.p 19 QYRGVSMLP-DGKWRACIV---NrDG--ETFNIGKFKTATAAALAHDRAILA 64
                         69*******.9******54...3333..*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-101977IPR001471AP2/ERF domain
SMARTSM003801.2E-41984IPR001471AP2/ERF domain
PROSITE profilePS5103211.4951978IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-101977IPR016177DNA-binding domain
PfamPF008475.3E-62064IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MATIEPIAAL NPTPAAAVQY RGVSMLPDGK WRACIVNRDG ETFNIGKFKT ATAAALAHDR  60
AILAVLGPAT SGAVLNFCAA FSDTELRFLS GRHAPARPSR VAAMVRQSDD GSYDTELSRF  120
AERAFDAYLD PDLAIDVANF RLANSDMLHR LMEKVAIAAG ANANQETHAK AKLDAEREAF  180
VQAAKNKATD ELWVERYHHR REATGHTFED ENRWPLVVPI DDVHVDWSPG EELIYLPHGS  240
SYVDEMIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG167600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7C6Z91e-160A0A2T7C6Z9_9POAL; Uncharacterized protein
STRINGPavir.Ib03513.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718