PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG171800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 470aa    MW: 50390.1 Da    PI: 5.0525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG171800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.6e-19161602127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya............tgkrkn 75 
                          p+G+rF Pt  el+   L  +++g+    +l++++++v+i++++P++L +++k   e++ +yfFs r+ +++            ++ r+ 
  Pavir.9KG171800.1.p  16 PRGYRFVPTSLELI-SILSDQIRGRAlpPPLHTIFHDVRILDYHPEELYERFKDaaEHRYIYFFSVREFQKPgagakvpedkdqKEPRPV 104
                          89************.78*******9976677778**************8655442255577*****999888666666655443344889 PP

                  NAM  76 ratksgyWkatgkdkevlsk...kgelvglkktLvfy.kgrapkgektdWvmheyr 127
                          r+++ g Wk +g  + +      +g + g   t+vfy + +  +g+k++W mhe+ 
  Pavir.9KG171800.1.p 105 RVVRGGGWKPSGGGQVLRWPrkqGGFVAGRMVTMVFYdRVDGGDGVKSNWGMHEFL 160
                          999*********9777666544355559999******556999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-2510172IPR003441NAC domain
PROSITE profilePS5100524.3515189IPR003441NAC domain
PfamPF023652.2E-1016159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAAAAADGSL TKHGFPRGYR FVPTSLELIS ILSDQIRGRA LPPPLHTIFH DVRILDYHPE  60
ELYERFKDAA EHRYIYFFSV REFQKPGAGA KVPEDKDQKE PRPVRVVRGG GWKPSGGGQV  120
LRWPRKQGGF VAGRMVTMVF YDRVDGGDGV KSNWGMHEFL VPVNPRLTSL TDNKYIRFYD  180
LALYRLYILK SGDMESENGA GSSSGGSGSG QQMMPNAYDH FSGSPAAVSP CSPLQSWGVS  240
TGNYHQPLAA GASTSQLMML PPQPHRPRLE HAQYQQQHAF GAAQAHTRHA AELPGNLYQF  300
AIPPAPAPAA AANPEAAQQA PAMAAHCAGQ DEAGPSGATR SPSPSPSPPP ATATEPGRFQ  360
VPDCVKPMEA AAPPTLEGIV PPAAKDESSM ADADDYSELG MPDWNTNFDL MPLDDSYLAF  420
TMEEILGFPA FDGEPPAMEG DGNNSGGENY SQASDGGTQE DPPAAFGCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG171800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791727.11e-139NAC domain-containing protein 72-like
TrEMBLA0A3L6TIB20.0A0A3L6TIB2_PANMI; Uncharacterized protein
STRINGPavir.Ib03441.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-10NAC family protein