PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG208000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 360aa    MW: 40641.4 Da    PI: 4.6782
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG208000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34431342102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++
  Pavir.9KG208000.1.p  43 FLTKTFDLVEDPATDAVVSWSRAGNSFVVWDPHVFADTLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQR 123
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+k 
  Pavir.9KG208000.1.p 124 HLLKTIKRRKP 134
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.03E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3839132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.6E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEPAAAAAGI VKEELLEQQP LQDGGGDAPR PMEGLHEVGP PPFLTKTFDL VEDPATDAVV  60
SWSRAGNSFV VWDPHVFADT LLPRLFKHSN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQRHLLKTIK RRKPPSAAPQ SHQQQASASC LEVGEFGFEE EIDRLKRDKN ILITEVVKLR  180
QEQQSTKDHV RAMEERLRVT EQKQVQMMGF LARAMRNPEF FQQLVQQQDK RKELEDAISK  240
KRRRPIDNTP FYSPEETSQS EQLDSQFMFD SDVLDGLSEP GMPELENLAV NIQELGKGST  300
DGAKMDQANG QSELNDDFWA ELLIEDFGDK AGQSELDGRP EVVEHLAQQL GYLSSSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-262413210129Heat shock factor protein 1
5d5v_B3e-262413210129Heat shock factor protein 1
5d5v_D3e-262413210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
2229243KRKELEDAISKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170040.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and immature seeds. {ECO:0000269|PubMed:16202242}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG208000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792788.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A2S3IM310.0A0A2S3IM31_9POAL; Uncharacterized protein
STRINGPavir.Ib03391.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]