PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG209400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 234aa MW: 26090.2 Da PI: 7.5679

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG209400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.4	4.9e-23	68	155	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ +vGF+vrk++ ++sk +g+it+ +fvC keg+r+++k++ ++++++ra+trtgC ++ +++++ +g++ev +l+l HnH l Pavir.9KG209400.1.p 68 FWVDYGGHVGFEVRKRYANESKYDGKITSCRFVCAKEGYRARDKRD-HNTKNPRAKTRTGCPVRIGLTLDRvEGTYEVLDLVLAHNHVL 155 9****************************************999.99******************9*************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-18	68	155	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAVLSGHQSA TTTPGQDGEA QGSSLLEAVL QPTANEDSVE EPNKENVNPI WVPQIGQKFR 60 NLDDAWTFWV DYGGHVGFEV RKRYANESKY DGKITSCRFV CAKEGYRARD KRDHNTKNPR 120 AKTRTGCPVR IGLTLDRVEG TYEVLDLVLA HNHVLHLPQT FHLLLSQRRI SEVQAFEIEA 180 ADDSGIRPKA AHELASRMVG GAINLSYTCR DQKNYLQGRC QRELAYGQAG SMF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG209400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462668.1	3e-88	protein FAR1-RELATED SEQUENCE 5
TrEMBL	K3Z018	5e-98	K3Z018_SETIT; Uncharacterized protein
STRING	Si019879m	9e-99	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG209400.1.p