PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG211300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 512aa    MW: 54481.3 Da    PI: 10.224
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG211300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-1586120135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt+ Tp+ R+gpdg  tLCnaCG++yr+ +l
  Pavir.9KG211300.1.p  86 CRHCGTKRTPQRREGPDGRGTLCNACGVRYRSGRL 120
                          *******************************9885 PP
2GATA603e-19430464135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt kTp+WR+gp+g +tLCnaCG++yr+ +l
  Pavir.9KG211300.1.p 430 CRHCGTEKTPQWREGPEGRRTLCNACGVRYRSGRL 464
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-1080130IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.72380116IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-1184143No hitNo description
Gene3DG3DSA:3.30.50.104.8E-1185117IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-1185134No hitNo description
PfamPF003203.1E-1386120IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14423483No hitNo description
SMARTSM004015.1E-17424474IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.123424460IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14428461IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.61E-14429480No hitNo description
PfamPF003203.5E-17430464IPR000679Zinc finger, GATA-type
PROSITE patternPS003440430455IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVVVDALHGD SAAAIADYLF GDGADLQAFL DHAALEVKAS GGGGDEGEEE LEWLSNKDAF  60
PTVETMGPSA PRPRTKGARR PPWQRCRHCG TKRTPQRREG PDGRGTLCNA CGVRYRSGRL  120
VPEYRPASSP TFSPELHSNR HRLVVEMRRR REATAQASVA AAGNEKGVEK LECLSKKGEF  180
LAEQVMPAAA ARPRTKRMRR PRKPVEWPAI AWSPPPPPPR APAVAGRRPS PEGGAGVAVE  240
QGRAPDGGDN GVGSCAAADQ GRAAVPADGG FNPAASLAAT AAAATAGQPC QQCGTEKTPW  300
WLVSYRSSCM VPVPPVPREL RFDWHNRIKL HRRAVRMAKF CPATAGDDEL GWPSNNDAFP  360
AVKAKPTPAA RPQIAPPRTP RSRRGGAVDV EHGLVGDGAA AAVEGRAAAP AGGGEVAAAP  420
RAPTATRRQC RHCGTEKTPQ WREGPEGRRT LCNACGVRYR SGRLVPEYRP ASSPNFSQGQ  480
HSNCHQQVVQ LRRRREESTE AASAAAAAPD K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG211300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796227.10.0uncharacterized protein LOC112876348
TrEMBLA0A2T7C6420.0A0A2T7C642_9POAL; Uncharacterized protein
STRINGPavir.Ib00848.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-27GATA transcription factor 9