PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG213000.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 244aa    MW: 28004.3 Da    PI: 6.3089
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG213000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like857.5e-2789143156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+++SHLQkYRl+
  Pavir.9KG213000.3.p  89 KSRLIWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQIASHLQKYRLH 143
                          68*******************.9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-8154No hitNo description
PROSITE profilePS5011014.514139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.8E-7170IPR011006CheY-like superfamily
PROSITE profilePS5129411.32784145IPR017930Myb domain
SuperFamilySSF466895.91E-1987146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-2788146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-2589143IPR006447Myb domain, plants
PfamPF002492.5E-694141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSNGDTSTV MKYITNGASD FLIKPLRIEE LKNIWQHVFR KQIGAEHRMC NNVQHIDQLS  60
FRTTEATATL DSEIRENNGM VTDIQDLRKS RLIWTMQLHR QFIAAVNSLG ADKAVPKKIL  120
EIMKVKHLTR EQIASHLQKY RLHLRNSTQT LHKDDTPSSS SYPNNESSIL RTQLNSSSNS  180
LYFDQDGCME ITDYSLPKDD LSSGSECILG ERNNYSPECF QDFRWDSDKQ GSETTYLWNF  240
EAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-1788145461ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG213000.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.11e-159two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-91EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A3L6TQX91e-167A0A3L6TQX9_PANMI; Uncharacterized protein
STRINGSi039992m1e-147(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-38response regulator 2