PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG215600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 207aa    MW: 23825.1 Da    PI: 9.3068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG215600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32.1e-09124172248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                           rWT+ E ellv++v ++G g+W+   ++      Rt  ++k++w+++l
  Pavir.9KG215600.1.p 124 SRWTAKEVELLVQGVSKFGVGRWTELKKKYFktSIRTSVHLKDKWRNLL 172
                          59*************************99998878************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.594118176IPR017930Myb domain
SuperFamilySSF466891.72E-15120199IPR009057Homeodomain-like
SMARTSM007171.3E-6122174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-12124173IPR009057Homeodomain-like
PfamPF002496.4E-7125172IPR001005SANT/Myb domain
CDDcd116602.20E-20125173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEQTGLFWGP VQEEDQGLDG FLGDLQFSLA SGTACEHQMA TYPARDDDAL FVLQLLEDAD  60
LDEWLSGGLH QSPLGDTLSH HQMLGRKSGR RGMRKRRISP WGTFVFEETT LEGNREYITR  120
KNNSRWTAKE VELLVQGVSK FGVGRWTELK KKYFKTSIRT SVHLKDKWRN LLRAYQENVQ  180
KYTLLDLEPP LVQQIRKLAA KHPYMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG215600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797447.11e-128uncharacterized protein LOC112877369
TrEMBLA0A2S3ILU91e-127A0A2S3ILU9_9POAL; Uncharacterized protein
STRINGPavir.Ia01842.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.22e-16TRF-like 3