PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG224200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 372aa MW: 37837.9 Da PI: 9.4643

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG224200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.8e-38	78	135	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Pavir.9KG224200.1.p 78 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 135 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.2E-32	80	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	81	135	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	81	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MIQELLGGAA MDQLKSMNDA NPTNLPLLLH PIVSKPSPTS SSSTSSRSSA QQQRSTSATS 60 SPQGQGQAQQ QQGQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA 120 LRNVPIGGGC RKPRPMPTPV AKPAVSCKSM GGAPSLGLGV GLGMGSGPAP WASSQQAAAA 180 QLMALLNSAR GVQGGHGGGN MHRLLGLDTM PHLPLHVMPG GGGNAGGAPA SLWPPAGPRP 240 IPTPPLMDSQ IGMGPLGQHD VLSSLGLKLP PPSSSPAASY YSDQLHAVVS SAAGRPHEYD 300 GPGATSLPCT TAATSLPPAA SSGVSAALSS ATVGLDLPPV SLLAPEMQYW AGPAAMSVAW 360 PDLPTPNGAF P*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MIQELLGGAA MDQLKSMNDA NPTNLPLLLH PIVSKPSPTS SSSTSSRSSA QQQRSTSATS  60
SPQGQGQAQQ QQGQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA  120
LRNVPIGGGC RKPRPMPTPV AKPAVSCKSM GGAPSLGLGV GLGMGSGPAP WASSQQAAAA  180
QLMALLNSAR GVQGGHGGGN MHRLLGLDTM PHLPLHVMPG GGGNAGGAPA SLWPPAGPRP  240
IPTPPLMDSQ IGMGPLGQHD VLSSLGLKLP PPSSSPAASY YSDQLHAVVS SAAGRPHEYD  300
GPGATSLPCT TAATSLPPAA SSGVSAALSS ATVGLDLPPV SLLAPEMQYW AGPAAMSVAW  360
PDLPTPNGAF P*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7271	3e-47	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG224200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969749	0.0	EU969749.1 Zea mays clone 335113 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796814.1	1e-178	dof zinc finger protein 4-like
TrEMBL	A0A3L6S3L8	1e-176	A0A3L6S3L8_PANMI; Uncharacterized protein
STRING	Pavir.Ia00348.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG224200.1.p