PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG224500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 621aa    MW: 73891.2 Da    PI: 8.7322
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG224500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.56.9e-1147127264
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCka 64 
                          f+++Y+  +GF+v++s+ +++   k+n+ei+k++++C ++gk+++++ +               ++ +r+t+++ rt+Ck 
  Pavir.9KG224500.1.p  47 FFSFYGFLAGFEVVVSHVSRTsakKNNNEIYKQEMKCHRYGKQTKKEVQtevadetllceasndDKAKRKTNVQIRTDCKT 127
                          9***************99888888999*****************999989*************999999**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-947127IPR004330FAR1 DNA binding domain
PfamPF105511.9E-36224317IPR018289MULE transposase domain
PROSITE profilePS509669.693491529IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6504531IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
ELTEQEIEEF IRKEQQAASE GNNADVDSKY TPQIGMEFKD RNAAHHFFSF YGFLAGFEVV  60
VSHVSRTSAK KNNNEIYKQE MKCHRYGKQT KKEVQTEVAD ETLLCEASND DKAKRKTNVQ  120
IRTDCKTLND NNIPTRKMIA ILSYLRGGLT ALPYKTKDVH NVRTKINREV TGNDMTQAME  180
YFRKRKIQDP TFYFRFQVDN NMKVKNIFWR EGISLKWSAE YGDCVSFDTT YMTNRYNLPF  240
APFVGITGHA HTCLLRCAFL SDETAETFKW VFETFVESMG GKHPKSIITD QDKAMKSAIE  300
KVFPNSKHRN CFFHIKSKCY NKNLRCFAIN KGLPEKFEDT VNFSVTEDEF EMLWQEMIAE  360
YKLENNKYFN KMWETRKRFI PVYFKNDFFP FIQSTGRISF LREYQRIVDT IKNKEEIEDN  420
FNKQKTPKEM LYRYTIEQQT MDLYNRNIYI KFSNQLKQTE LYKYKETEKG RCFEVWYKAN  480
QIKKRERIRK YIVLTDLTEG CEDFSCICGK FNKDGILCAH ILKVIVEEEI NKIPDKYFID  540
HWRKKERKYH IQEDSDGNST HELLRFNMLS RKAAILTSKG AKIEEGMQYL DEEFDRLNKH  600
LDFLMQDKER RTTSMITRES E
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG224500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5S6T50.0A0A1Z5S6T5_SORBI; Uncharacterized protein
STRINGPavir.J32386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-62FAR1-related sequence 5