PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG241000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 260aa MW: 28451.8 Da PI: 4.8431

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG241000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.1e-10	152	196	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+++ f++L +++P a +K +K++ L +++Y+++L+ Pavir.9KG241000.1.p 152 VLGERRRREKMHLQFATLASIIPDA-----TKRDKVSLLGSTIDYVQHLR 196 556********************.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.41E-10	139	200	No hit	No description
PROSITE profile	PS50888	14.291	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	149	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-13	150	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	151	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-10	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MNSSSANHQW LEELENEDLG ELDFIDPLSM QQLAESLADE LWDQPTQEQQ VQLDLRRQPM 60 CPTGFSFLGD VSKYYAGAEG FPTTMTAISA GGGDSMFSFT DGKSKQLSFS SPEPKQEGDA 120 TATAGRFGAP PPPTTMETKG RRRASSRVHE HVLGERRRRE KMHLQFATLA SIIPDATKRD 180 KVSLLGSTID YVQHLRGRLK ALQDEQLQST GSTAESPPLD ARCCIGSEDD GEASQKIEAD 240 VRGTTVLLRV VCREKITGC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	158	RRRASSRVHEHVLGERRRR
2	146	158	RVHEHVLGERRRR
3	154	159	ERRRRE
4	155	160	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG241000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796991.1	1e-161	transcription factor bHLH18-like isoform X1
TrEMBL	A0A2T7C914	1e-162	A0A2T7C914_9POAL; Uncharacterized protein
STRING	Pavir.Ib02672.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG241000.1.p