PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG253200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CAMTA

Protein Properties

Length: 1026aa MW: 113989 Da PI: 5.5888

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG253200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.2	1.6e-53	21	138	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+ee Pavir.9KG253200.1.p 21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEE 110 45559*********************************************************************************** PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n +fqrr+yw+Lee++ +ivlvhyle+k Pavir.9KG253200.1.p 111 NINFQRRTYWMLEEDFMHIVLVHYLETK 138 ***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.32	17	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-71	20	138	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.7E-48	23	136	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.9E-6	446	533	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	6.8E-17	447	533	IPR014756	Immunoglobulin E-set
Pfam	PF01833	9.9E-7	447	525	IPR002909	IPT domain
SuperFamily	SSF48403	5.29E-16	639	741	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.0E-17	642	743	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.78E-12	642	739	No hit	No description
PROSITE profile	PS50088	8.843	648	680	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.096	648	713	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.736	681	713	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.78E-8	840	893	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.086	842	864	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	843	872	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0032	844	863	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	865	887	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	866	890	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.0E-4	868	887	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence Send to blast
MASAEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS 180 EYEEAESDIY SGGAGYHSFT GMQQHENGTG PVIDSSVFSP YTPASSIGNY QGLHPMTQNT 240 SFYPGNQHSS LVLNGSSTGV ATNGYANQTD PTSWNPVIEL DNGPVQMPLQ FPVPPEQGTS 300 TEGLGIDYLT FDEVYSDGLS LKDIGAAGAS GESFWQFPGA TGDLSAPESN FPQPNDGSLE 360 AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELLEV EDSQIQSSSG AYWSTEEADS 420 IIEASSREPL EQFTVSPMLS QDQLFSIVDF APTWTYVGSK TKILVTGSFL NNSKVTERCK 480 WSCMFGEVEV PAKILADGTL LCYSPQHKPG RVPFYITCSN RLACSEVREF EFRPTVTQYM 540 DAPSPHGATN KVYFQIRLDK LLSLGPDEYQ ATVSNPSLEM IELSKKISSL MASNDEWSNL 600 LKLAVDNEPS TDDQQDQFAE NLIKNKLHVW LLNKVSVGGK GPSVLDDEGQ GVLHLAAALG 660 YDWAVRPTLA AGVNINFRDV HGWTALHWAA FCGRERTVVA LIALGAAPGA LTDPYPDFPE 720 STPADLASAN GQKGISGFLA ESSLTSHLQA LNLKEANMAE ISGLPGIGDV TERDSLQPPS 780 GDSLGPVRNA AQAAARIYQV FRVQSFQRKQ AAQYEDDKGG LSDERALSLL SVKPSKPGQL 840 DPLHSAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI 900 LRWRRRGAGL RGFRSTEAST EGSSGGTRSN MIKDKPSGDD YDFLQEGRKQ TEERLQKALA 960 RVKSMAQYPE ARDQYQRILT VVSKMQESQA MQEKMLEESA EMDDGYFMNE LQELWDDDTP 1020 LPGYF*

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence Send to blast

MASAEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS  180
EYEEAESDIY SGGAGYHSFT GMQQHENGTG PVIDSSVFSP YTPASSIGNY QGLHPMTQNT  240
SFYPGNQHSS LVLNGSSTGV ATNGYANQTD PTSWNPVIEL DNGPVQMPLQ FPVPPEQGTS  300
TEGLGIDYLT FDEVYSDGLS LKDIGAAGAS GESFWQFPGA TGDLSAPESN FPQPNDGSLE  360
AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELLEV EDSQIQSSSG AYWSTEEADS  420
IIEASSREPL EQFTVSPMLS QDQLFSIVDF APTWTYVGSK TKILVTGSFL NNSKVTERCK  480
WSCMFGEVEV PAKILADGTL LCYSPQHKPG RVPFYITCSN RLACSEVREF EFRPTVTQYM  540
DAPSPHGATN KVYFQIRLDK LLSLGPDEYQ ATVSNPSLEM IELSKKISSL MASNDEWSNL  600
LKLAVDNEPS TDDQQDQFAE NLIKNKLHVW LLNKVSVGGK GPSVLDDEGQ GVLHLAAALG  660
YDWAVRPTLA AGVNINFRDV HGWTALHWAA FCGRERTVVA LIALGAAPGA LTDPYPDFPE  720
STPADLASAN GQKGISGFLA ESSLTSHLQA LNLKEANMAE ISGLPGIGDV TERDSLQPPS  780
GDSLGPVRNA AQAAARIYQV FRVQSFQRKQ AAQYEDDKGG LSDERALSLL SVKPSKPGQL  840
DPLHSAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI  900
LRWRRRGAGL RGFRSTEAST EGSSGGTRSN MIKDKPSGDD YDFLQEGRKQ TEERLQKALA  960
RVKSMAQYPE ARDQYQRILT VVSKMQESQA MQEKMLEESA EMDDGYFMNE LQELWDDDTP  1020
LPGYF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7063	0.0	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG253200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793388.1	0.0	calmodulin-binding transcription activator 3-like isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A3L6TUJ2	0.0	A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRING	Pavir.Ia02749.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Pavir.9KG253200.1.p

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]