PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG257200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 352aa    MW: 41113.2 Da    PI: 9.2043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG257200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.95.7e-072375791
                 FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                         + r++Cka +k kk++ +g w  ++++leH+H+l p
  Pavir.9KG257200.1.p  2 SMRCECKAFVKAKKNTkKGYWFFERIRLEHSHPLHP 37
                         579************999***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105511.2E-31158252IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSMRCECKAF VKAKKNTKKG YWFFERIRLE HSHPLHPSPR LTQFMNAHKN KNPVIMGIVD  60
KMQHADASHN TIVNYLSDMY GGVQNFTFTE MDLKNRRAAS ARSERENDIP KLMEFFKEMK  120
AQNPYFYEEV QVDENNVIKN VFWSHASQRA EYKDFGDVVT FDTTYRTNMY SMPLAMFVVS  180
NHQLQNVVFG QALLHDEKAD TFEWLFKAFK NCMSGSEDPQ CILTDQDSSM AAAIPRVFPN  240
MQHKLCRWHM LKKYRDELKK LYKEHEGLKI KLLTVINHPL TPIEFEAAWS ELLTEYGMGE  300
NDAIKGIWES RHLWVSAYLK PLYCGRMTST QRSESVNKAV IKRVLQRGRH A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG257200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681792.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368PYX30.0A0A368PYX3_SETIT; Uncharacterized protein
STRINGPavir.Ib02914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-60FAR1-related sequence 5