PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG267300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 305aa    MW: 33592.6 Da    PI: 8.1203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG267300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14102153155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Pavir.9KG267300.1.p 102 QRMTHISVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 153
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-13100157No hitNo description
PROSITE profilePS5088816.069101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13102157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17102170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALLDAVVYS QPQGHFGYGP RDASYGLSWS SDATSFGEWD QFLLASLVQN AEESGEEVGS  60
KKASPEHDAA PSVVDSPSPV TTTKRKRRRP KVVKNEEEIK CQRMTHISVE RNRRRQMNEY  120
LAVLRSLMPP SYAQRGDQAS IVGGAINYVR ELEQLLQSLQ VQRSLKEHNP NLSNPFAGFF  180
RFPQYSATSA SHCHGDPSNH TNEDQRPNRS PRSPSVAADI EASMVEGHAS VKVQAPRRPR  240
QLLRLADGLQ QLGLTTLHLN VSTAGTTVMY SFSLKVEDEC RLSSVEEIAT AVHEILGRVG  300
GGRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KRKRRR
28488RKRRR
3102113RMTHISVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG267300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797243.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-65BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3L6SER80.0A0A3L6SER8_PANMI; Transcription factor bHLH96-like
STRINGPavir.Ib02778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]