PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG292600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 306aa    MW: 32212.6 Da    PI: 5.6172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG292600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17152201456
                  AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           GVr ++ +g+++AeIrd + ng  +r++lg+f+t+e Aa a+++a+ +++g+
  Pavir.9KG292600.1.p 152 IGVRKRP-WGKFAAEIRDSTRNG--ARVWLGTFDTPEAAALAYDHAAFAMRGH 201
                          6******.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.969150208IPR001471AP2/ERF domain
PRINTSPR003671.2E-7151162IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20151209IPR016177DNA-binding domain
PfamPF008471.7E-12152201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-27153209IPR001471AP2/ERF domain
SMARTSM003801.6E-31153214IPR001471AP2/ERF domain
CDDcd000188.87E-16153210No hitNo description
PRINTSPR003671.2E-7174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEPSYNNSYS HYYGGWDDDD DVVPFACAPP SLPAASSGNT YSKSSTAAAA VCEPTSSHSP  60
LAPCAAGGQL LLRFGGDEVD DSFSVQDDGN GMCIEPFSAL GGMGAASIST ATGSSSWSAQ  120
AKHHEVRSTT TTRAAANGPS AGSSEEEVPQ LIGVRKRPWG KFAAEIRDST RNGARVWLGT  180
FDTPEAAALA YDHAAFAMRG HAAVLNLPVQ RVRESLRQLG ISAAAGDSPV LELKRRHCMR  240
KRSLKNKKAA GMDQLPAATT SRGNNNQSQP PQEQRCVLEL EDLGADYLEG LLALSDYSSQ  300
PASFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23153210865ATERF1
3gcc_A1e-23153210865ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG292600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791720.11e-153ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2T7C6R11e-152A0A2T7C6R1_9POAL; Uncharacterized protein
STRINGPavir.Ib03413.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-34ethylene response factor 1