PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG312800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 275aa MW: 29482.5 Da PI: 10.2532

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG312800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	92.8	2.5e-29	32	126	1	85
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+kv tpsdv+k++rlv+pk++ae++ g ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD Pavir.9KG312800.1.p 32 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaaaG--AGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGD 119 99************************99999888642..347789*************************************** PP EEEEEE- CS B3 79 fvvFkld 85 +v+F + Pavir.9KG312800.1.p 120 TVLFLRG 126 **943 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-39	27	138	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-30	29	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.43E-26	30	123	No hit	No description
Pfam	PF02362	3.6E-27	32	142	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-22	32	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.775	32	144	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEFTPAHGGV EDSERARGGG GGPAWVEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPA 60 LDASAAAAAG AGKGLVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT 120 VLFLRGAGQG PARARLFIDF RRRRQDLAFL QPPLASAQRF LPLSSVPICP WQDYSAYGAS 180 APAPSSRHVL FLRPQVPAAV VLTSVPVSVA ASTVEATRSK RVRLFGVNLD CPQDGEDGAR 240 VTRTASALVQ LPSPSSSTSS STAGKDACCL DLGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-52	27	143	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-52	27	143	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG312800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727005	0.0	KJ727005.1 Zea mays clone pUT3981 ABI3VP1 transcription factor (ABI34) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796710.1	1e-162	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	1e-102	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A3L6TSJ7	1e-162	A0A3L6TSJ7_PANMI; Putative B3 domain-containing protein
STRING	Pavir.J35382.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	8e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG312800.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]