PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG331200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WOX

Protein Properties

Length: 141aa MW: 14784.6 Da PI: 11.5774

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG331200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.4	6.7e-15	36	96	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e+ ++ k l + +++V++WFqNr + ++ Pavir.9KG331200.1.p 36 RSRWTPKPEQILILESIFNSgMVNPPKDEIVRIRKLLerfgAVGDANVFYWFQNRHFRSRR 96 89***************99********************************999997 PP
2	Wus_type_Homeobox	105.9	2.6e-34	35	98	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+ei ri++ Le++G+++d+NVfyWFQNr+ R+r++q Pavir.9KG331200.1.p 35 VRSRWTPKPEQILILESIFNSGMVNPPKDEIVRIRKLLERFGAVGDANVFYWFQNRHFRSRRRQ 98 589*********************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.7E-14	30	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.961	32	97	IPR001356	Homeobox domain
SMART	SM00389	1.9E-5	34	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-7	36	102	IPR009057	Homeodomain-like
CDD	cd00086	1.16E-5	36	94	No hit	No description
Pfam	PF00046	1.1E-12	36	96	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MAAGAAIAPA DRQSSGGSPE ERGNGSGGRG TGEPVRSRWT PKPEQILILE SIFNSGMVNP 60 PKDEIVRIRK LLERFGAVGD ANVFYWFQNR HFRSRRRQRQ MQAAAAGSSA AQSSVASPTV 120 GLPSGAVQYP LAMGGSASVS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG331200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087786	1e-116	BT087786.1 Zea mays full-length cDNA clone ZM_BFb0202I23 mRNA, complete cds.
GenBank	EU953912	1e-116	EU953912.1 Zea mays clone 1449250 homeobox domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796618.1	2e-51	WUSCHEL-related homeobox 6-like
Swissprot	Q10M29	2e-39	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A2S3IR14	2e-50	A0A2S3IR14_9POAL; Uncharacterized protein
STRING	Pavir.Ib01521.1.p	2e-86	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	5e-33	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Pavir.9KG331200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]