PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG336200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 253aa    MW: 27520.9 Da    PI: 7.9816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG336200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-1994144255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+ +l+g
  Pavir.9KG336200.1.p  94 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFRLRG 144
                          7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-2394153IPR016177DNA-binding domain
CDDcd000187.31E-2994153No hitNo description
PfamPF008472.1E-1394144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3294153IPR001471AP2/ERF domain
PROSITE profilePS5103224.68494152IPR001471AP2/ERF domain
SMARTSM003805.1E-3794158IPR001471AP2/ERF domain
PRINTSPR003676.9E-1495106IPR001471AP2/ERF domain
PRINTSPR003676.9E-14134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MALLREHLDL IRAHLLDDRH DHDAAASSED HSASSPSPSP PAGRRPLPAL SVALPPRPAL  60
ALQQLWAAPP PQIIHQQEQS YYYCPEAEED DFRRYRGVRQ RPWGKYAAEI RDPARKGARV  120
WLGTYDTAVE AARAYDRAAF RLRGSKAILN FPNEVAFGTA ARWGPPPPPA AAPRYPAAAG  180
NNKRARSPER GPQEQGAGCM VIREVKRERV QEPAGSCGWD GVATAPTAAS GGADFWEEEE  240
LLKGAICSLP PL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2893158469ATERF1
3gcc_A6e-2893158469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG336200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9770883e-92EU977088.1 Zea mays clone 998737 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796155.11e-114ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6SDV41e-123A0A3L6SDV4_PANMI; Uncharacterized protein
STRINGPavir.Ib02259.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-23ERF family protein