PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG340200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 263aa    MW: 29042 Da    PI: 10.9809
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG340200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.68.8e-1516921486
             trihelix 14 rremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                         r++++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r++  + ++p+f  l+
  Pavir.9KG340200.1.p 16 RSNRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSK--EPKWPFFPLLH 92
                         7899*********************998888788899*************************9844..447****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-141993No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRPMKAHRS NRPVNRSNRW EALRKGNLRA ADWDDVANAV TARCGRFPTA TPKSGVQCRH  60
KIEKLRKRYR AERSRSAGRS KEPKWPFFPL LHDLAGGGVP DPSPNAIVKI KTKGPVPPAS  120
TPSPVSSPSS EEAVRSRSLH GLISNGGAGS GLRFTIPKAS RSRPAAVAAF NPERNHGEDD  180
AESEAMAEVA DALRAVGERF LRMEERRLEL SLQMEKERME SEMKRTQSML DAQQLFLEAF  240
LGKQQQHKKA RLSPASTAME ED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70070.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG340200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
GenBankKJ7278520.0KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798156.11e-175trihelix transcription factor ASIL1
TrEMBLA0A3L6TM081e-174A0A3L6TM08_PANMI; Trihelix transcription factor ASIL1
STRINGPavir.Ib02309.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-16sequence-specific DNA binding transcription factors