PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG348300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 112aa MW: 12289.1 Da PI: 9.1581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG348300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.3	3.3e-16	31	109	11	83
DUF260 11 kCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 +C++ C++ py+ p++q++++ +++k++ ++ +l+ll+ ++ ++ r+++++sl+y+A r+ +Pvy++vg++++ Pavir.9KG348300.1.p 31 GCNDTCTIHPYLqwiktPETQANDTIFLAKFYDRAMLLNLLAVVHADHlRPAVFRSLLYKAYGRIVNPVYSSVGLLWSA 109 6*****************************************77766*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.099	20	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-12	31	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MAPAGGRWSP VGERPEPSSR PSIGEGSTTI GCNDTCTIHP YLQWIKTPET QANDTIFLAK 60 FYDRAMLLNL LAVVHADHLR PAVFRSLLYK AYGRIVNPVY SSVGLLWSAT R*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG348300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142806.1	2e-36	uncharacterized protein LOC100275184
Swissprot	Q9ZW96	7e-33	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	B6SPU9	3e-35	B6SPU9_MAIZE; LOB domain-containing protein 42
STRING	GRMZM2G060544_P01	6e-36	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	3e-35	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Pavir.9KG348300.1.p