PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG351000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 174aa MW: 20151.1 Da PI: 10.074

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG351000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.7	4.3e-14	28	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle.....leH 85 +f+++YA++vGF + + g+ ++r +Cskegk e +kk+ + ++r++++++tgCk klk++ k+ ++++++ l+H Pavir.9KG351000.1.p 28 EFFSRYAEKVGFGINLGN-------GKPYSRIVRCSKEGKCEFHKKD-SPRKRNKTSKKTGCKSKLKLQFVKNRFKQIERVVieqahLDH 109 6***********9995.......55679999******9999.999***********998776555554444444444* PP FAR1 86 nHela 90 nH++ Pavir.9KG351000.1.p 110 NHKFL 114 **985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-8	28	114	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSMQEDSIDP ELVPRPGMSF RTEKDAIEFF SRYAEKVGFG INLGNGKPYS RIVRCSKEGK 60 CEFHKKDSPR KRNKTSKKTG CKSKLKLQFV KNRFKQIERV VIEQAHLDHN HKFLKPGETQ 120 HLSSHKKKEP VIFEYIDELH KSEVPPQCVK NIMREMHGGD ENVPITSRDL ENR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG351000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1W0W4I2	5e-52	A0A1W0W4I2_SORBI; Uncharacterized protein
STRING	Sb02g041255.1	1e-52	(Sorghum bicolor)
STRING	Sb03g018690.1	6e-51	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG351000.1.p