PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG379200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 372aa    MW: 40435.9 Da    PI: 8.8037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG379200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-3190146259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers  ++++++i+Y+g+Hnh+
  Pavir.9KG379200.1.p  90 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 146
                          8***************************************9.***************8 PP
2WRKY104.75.1e-33258316159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Pavir.9KG379200.1.p 258 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 316
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.45684148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-2885148IPR003657WRKY domain
SuperFamilySSF1182905.62E-2588148IPR003657WRKY domain
SMARTSM007743.9E-3389147IPR003657WRKY domain
PfamPF031066.4E-2490146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-36245318IPR003657WRKY domain
SuperFamilySSF1182902.35E-29250318IPR003657WRKY domain
PROSITE profilePS5081136.977253318IPR003657WRKY domain
SMARTSM007741.0E-38258317IPR003657WRKY domain
PfamPF031061.1E-25259316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSHQQALAQV TAQAVHSQFN MINHSDFSIP FSSTARPAST SQHQHANPAN VTSTQEISTL  60
PSHTAKKSIE SNEVSQGLQS SAPSFDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHASC  120
PVKKKVERSG EGHITQIIYR GQHNHQRPPK RRSKDGGGLL IEADDFHENE DASTRSEPGS  180
QDHSGKHGGS NDGIAGPRVS RKREGDEQLS GSSDSEEEED AEQRVGNGDA GRANANRRHV  240
PTPAQRIIVQ TTSQVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTYQGCD VKKHIERSSQ  300
DPKAVITTYE GKHSHDVPAA RNSSHAAAAN TNASSSTSLP HRGQNSASSS GRGADVSSAS  360
SMLLKEENEI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3890319878Probable WRKY transcription factor 4
2lex_A1e-3890319878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11790.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG379200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
RefseqXP_012698576.10.0probable WRKY transcription factor 4 isoform X2
SwissprotQ9ZQ707e-92WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2T7CB620.0A0A2T7CB62_9POAL; Uncharacterized protein
STRINGPavir.Ib02081.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-76WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]