PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG387700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 445aa    MW: 45339.7 Da    PI: 8.5458
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG387700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof101.65e-32105162359
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr.rknk 59 
                          e+ l+cprC s++tkfCyynnyslsqPr+fC+aCrryWt+GGalr+ P  +++ r+n 
  Pavir.9KG387700.1.p 105 ESGLPCPRCRSADTKFCYYNNYSLSQPRHFCRACRRYWTHGGALRDFPFSTSAaRRNS 162
                          67899*******************************************9765414443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2488163IPR003851Zinc finger, Dof-type
PfamPF027011.7E-28108160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.133108162IPR003851Zinc finger, Dof-type
PROSITE patternPS013610110146IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLDATSRRRK QTTKEDLFST MPQHGSRIIP ADHGGAGRGG GKEAHRNKQH HHQLPGAPPM  60
APHPGIMPTD QASMSAGDGS SSCSPWVKPG CMMELARLAK IPPPESGLPC PRCRSADTKF  120
CYYNNYSLSQ PRHFCRACRR YWTHGGALRD FPFSTSAARR NSKPAASNKH HEPPSMVASC  180
CASGTGGGAA SPSSSSGASA AAPGGGGRAA AAAAMAVTHA QPLEQLASLA VGAESHRTVA  240
SRLWLPGHRS SQQDHPLGYC RQLGNITGAA TTAIRLEVER QWYPPPQRQP LSFLGYINAA  300
VAAPPTPAAG LLGASDAGAT TEAGSFAGGQ MQAAMIICRV PGSAALTTEP AAASEMMAGN  360
PPLPSTETTT GTLTTTSSPG EFLVESGLSP YFLGSGGSWA CSYGSCSAGN DGGGGGSTSC  420
TAAPGTSVWP DPSGLTSSSS GTIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG387700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6385156e-33JN638515.1 Sorghum bicolor cultivar Pant Chari 5 dof-type zinc finger protein (dof5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792039.11e-126dof zinc finger protein 3-like
TrEMBLA0A2T7CBF61e-146A0A2T7CBF6_9POAL; Uncharacterized protein
STRINGPavir.Ib02046.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2288456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-29Dof family protein