PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG402400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 987aa    MW: 110568 Da    PI: 6.7794
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG402400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.2e-56201372118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+ee
  Pavir.9KG402400.3.p  20 LQEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEE 109
                          56669************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrr+ywlLee++++ivlvhylevk
  Pavir.9KG402400.3.p 110 NENFQRRTYWLLEEDFTHIVLVHYLEVK 137
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.66816142IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-7819137IPR005559CG-1 DNA-binding domain
PfamPF038598.5E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-9443532IPR013783Immunoglobulin-like fold
CDDcd001020.00306443531No hitNo description
SuperFamilySSF812964.04E-17444530IPR014756Immunoglobulin E-set
PfamPF018331.8E-6444527IPR002909IPT domain
SuperFamilySSF484031.71E-15622737IPR020683Ankyrin repeat-containing domain
CDDcd002045.26E-12624735No hitNo description
Gene3DG3DSA:1.25.40.207.8E-16632738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.714643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778676708IPR002110Ankyrin repeat
SuperFamilySSF525401.33E-7842896IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791846875IPR000048IQ motif, EF-hand binding site
PfamPF006120.0053847866IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212869893IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015871890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MAENRNFALP GQPPDFSQML QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQTMEAAE  180
SPISRQTSDY EDTESADNFR ASSRYHPLAE MQQPVDGFIT ENMFYASSST VGSRQGYHGE  240
MLPTTANVDN HSLSHHDIAR MFDDSNTGLS SVSRILFDSV PFNEPFTDYS TGFTEPTLHS  300
SFACLEANNL DDSSRLQTFT SEALYTNHLS KEEADALSFT GIPSSEVNGS RYTEGSIKHP  360
LLKQLSLDLM TIEPTGLKKH DSFSRWMSKE LEEVVDLGIK STSDAFWSNI ETVKVPDGSN  420
VLTNEQLDAY AVSPSLSQDQ LFSILDVSPS CIYVGTNTKV SVTGTFLVNK EHVENRKWSC  480
MFGNVEVPAE VLTDGTLRCY APANQLGRVP FYVTCSNRVA CSEVREFEYR DPETQYMEPS  540
HSQANGVNEM HLHIRLEKLL TLGPDDHQVH VLSSGNEKYE LINAINSLML DVKWSDQESA  600
SANKVVSTAR DQSLKKLVKE KLHHWLICKI NDDGKGPNVL CKEGQGVIHL VAALGYDWAI  660
RPIIVAGVNV NFRDAHGWTA LHWAASLGRE RTIGVLIANG AAAGALTDPT SEFPSGRSPA  720
DLASVNGHKG IAGFLAESAL TSHLSALTIR ESKDSTAEVC GLPAVEDLTG TDSTQLAGED  780
SHAESLEGSL SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY GDDDCGLSDE QTLSLVSVKP  840
GHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQAHV RGHQVRKSYR KVVWSVGIVE  900
KVILRWRRKR PGLRGFRPQK QLEGSSQIQP AKAEDEYDFL HDGRRQAEAR LQRALARVHS  960
MSQYPEAREQ YHRLTTCVAE MKQSRV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.134910.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG402400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793079.10.0calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A2S3IQ520.0A0A2S3IQ52_9POAL; Uncharacterized protein
STRINGPavir.Ia03131.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein